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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_154981852_154982992_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
154981852 - 154982992
Intron Length:
1141

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGT|GTCAGTTTT
5'SS Class:
weak_major
3'SS Sequence:
TCTCTTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
CCATCTATACTT
Flanking Amino Acid:
LDCSFLLLSGTVYKAWLCSQ
Intron Amino Acid Position:
26

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.6
0.3
1.4
71.7
40.8
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
90.8
0.92
0.6
83.9
31.1
Minor 5ss
43.5
-0.7
2.9
60
44.3
Minor BPS
46.7
-0.1
1.9
60.76
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003757
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003836
154965191 - 154983067
17877