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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_15540732_15546227_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15540732 - 15546227
Intron Length:
5496

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTATGTTAG
5'SS Class:
major
3'SS Sequence:
TTCTTTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
GCTTTCTAAAGT
Flanking Amino Acid:
MRSQRDSNRHVKVK
Intron Amino Acid Position:
5

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
67.9
39.7
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
92.3
0.95
0.6
88.3
21.5
Minor 5ss
46.1
-0.4
2.5
58.1
46.5
Minor BPS
53.4
0.19
2
71.56
45.6

Associated Gene:

Gene:
GRAMD4
Ensembl Gene ID:
ENSAPLG00000002925
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034407
15540718 - 15596834
56117