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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_15544880_15546227_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15544880 - 15546227
Intron Length:
1348

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTTGTGCT
5'SS Class:
major
3'SS Sequence:
TTCTTTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
GCTTTCTAAAGT
Flanking Amino Acid:
MRDSNRHVKVK
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.61
1.1
72.6
36.5
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
92.3
0.95
0.6
88.3
21.5
Minor 5ss
37.8
-1.4
3
51.1
45.4
Minor BPS
53.4
0.19
2
71.56
45.6

Associated Gene:

Gene:
GRAMD4
Ensembl Gene ID:
ENSAPLG00000002925
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003013
15544875 - 15596834
51960