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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_155532182_155539357_F

Intron Information:

Intron Rank:
131144
Intron Class:
major
Intron Phase:
Intron Coordinates:
155532182 - 155539357
Intron Length:
7176

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTTGT
5'SS Class:
major
3'SS Sequence:
GTTTTCCTACTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
GTTTTCCTACTA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1.1
72.1
40.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
74
0.54
0.9
67.8
38.9
Minor 5ss
44.8
-0.6
2.9
68.2
42.5
Minor BPS
51.3
0.04
1.9
68.19
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020450
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024294
155531560 - 155542349
10790