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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_155535012_155539357_F

Intron Information:

Intron Rank:
131142
Intron Class:
major
Intron Phase:
Intron Coordinates:
155535012 - 155539357
Intron Length:
4346

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTAAT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCCTACTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
GTTTTCCTACTA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.77
0.9
81.4
31.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
74
0.54
0.9
67.8
38.9
Minor 5ss
43.6
-0.7
2.6
56.3
42.5
Minor BPS
51.3
0.04
1.9
68.19
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020450
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021375
155534174 - 155551828
17655