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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_155536851_155539357_F

Intron Information:

Intron Rank:
131146
Intron Class:
major
Intron Phase:
Intron Coordinates:
155536851 - 155539357
Intron Length:
2507

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGCTTTTT
5'SS Class:
major
3'SS Sequence:
GTTTTCCTACTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
GTTTTCCTACTA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
76.9
34.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
74
0.54
0.9
67.8
38.9
Minor 5ss
39.7
-1.2
3.2
58.4
46.1
Minor BPS
51.3
0.04
1.9
68.19
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020450
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042373
155536164 - 155542349
6186