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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_155624033_155635029_R

Intron Information:

Intron Rank:
148166
Intron Class:
major
Intron Phase:
Intron Coordinates:
155624033 - 155635029
Intron Length:
10997

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TCTTCACCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TCTTCACCAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.7
1.12
0.6
91.3
19.2
Major BPS
77.5
0.68
1
79.6
33
Major PPT
72.5
0.51
0.9
67.1
33
Minor 5ss
44.8
-0.6
2.8
61.1
43.8
Minor BPS
49.4
-0
2.1
69.96
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027017
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041978
155622877 - 155635089
12213