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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_155631915_155634782_F

Intron Information:

Intron Rank:
140511
Intron Class:
major
Intron Phase:
Intron Coordinates:
155631915 - 155634782
Intron Length:
2868

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGTGGT
5'SS Class:
major
3'SS Sequence:
TTCTTCACTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TGTTTCTTCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1.1
69.1
41.9
Major BPS
77.5
0.68
1
79.6
33
Major PPT
83.3
0.75
0.8
77.5
29.8
Minor 5ss
36.4
-1.5
3.4
50
46.3
Minor BPS
72.3
0.78
1.7
88.23
36.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025629
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024402
155625793 - 155635255
9463
ENSAPLT00000018530
155625793 - 155635255
9463