About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_155645992_155650813_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
155645992 - 155650813
Intron Length:
4822

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTTTTTAACA
Flanking Amino Acid:
NEAREIITSKGFTRSKRLLT
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
90.3
22.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
90.7
0.92
0.7
88.7
26.8
Minor 5ss
45.5
-0.5
3
66.9
44.4
Minor BPS
86.3
1.14
0.8
90.59
23.6

Associated Gene:

Gene:
ABHD13
Ensembl Gene ID:
ENSAPLG00000001650
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001643
155645195 - 155651862
6668