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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_15568753_15576809_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15568753 - 15576809
Intron Length:
8057

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TAGCATTTCACA
Flanking Amino Acid:
EQKVNEVLKARAEEVPATQQ
Intron Amino Acid Position:
153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
26.8
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
85.6
0.8
0.7
81.4
30.6
Minor 5ss
29.7
-2.3
3.3
37.8
47
Minor BPS
47.3
-0.2
1.9
58.83
40.7

Associated Gene:

Gene:
GRAMD4
Ensembl Gene ID:
ENSAPLG00000002925
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037161
15521632 - 15596834
75203
ENSAPLT00000034407
15540718 - 15596834
56117
ENSAPLT00000020154
15521632 - 15596834
75203
ENSAPLT00000003013
15544875 - 15596834
51960
ENSAPLT00000046780
15521632 - 15596834
75203