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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_155705209_155706091_F

Intron Information:

Intron Rank:
124172
Intron Class:
major
Intron Phase:
Intron Coordinates:
155705209 - 155706091
Intron Length:
883

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGCAGC
5'SS Class:
major
3'SS Sequence:
CCTTTGTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTTAC
U12 Branch Point Sequence:
TCTTACAGGAGC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
67.1
44.6
Major BPS
72.7
0.56
0.9
63.4
35.2
Major PPT
85.1
0.79
0.8
79.6
32.3
Minor 5ss
39.3
-1.2
2.8
43.9
43.7
Minor BPS
42.2
-0.6
2.1
56.52
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016941
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018611
155704135 - 155706909
2775