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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_155706552_155706746_F

Intron Information:

Intron Rank:
124174
Intron Class:
major
Intron Phase:
Intron Coordinates:
155706552 - 155706746
Intron Length:
195

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTGGG
5'SS Class:
major
3'SS Sequence:
TGTTCTGTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TCTTTTTGAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
63.5
42.9
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
77.8
0.62
0.9
72
38
Minor 5ss
27.1
-2.6
3
31.9
42.5
Minor BPS
58.9
0.27
1.5
68.73
37.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016941
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018611
155704135 - 155706909
2775