About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_155740509_155741250_F

Intron Information:

Intron Rank:
130848
Intron Class:
major
Intron Phase:
Intron Coordinates:
155740509 - 155741250
Intron Length:
742

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCTGTCTC
5'SS Class:
major
3'SS Sequence:
TCCATCATTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATATAT
U12 Branch Point Sequence:
TTCTCCATCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.54
1.3
68.8
42.3
Major BPS
62.6
0.31
1
59.1
37.6
Major PPT
71.2
0.48
0.9
62.5
38.3
Minor 5ss
40.3
-1.1
2.8
53.3
43.8
Minor BPS
57.8
0.33
2
80.51
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020262
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019263
155738100 - 155769537
31438