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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_155740509_155802164_F

Intron Information:

Intron Rank:
130851
Intron Class:
major
Intron Phase:
Intron Coordinates:
155740509 - 155802164
Intron Length:
61656

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCTGTCTC
5'SS Class:
major
3'SS Sequence:
TACTCTTTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTTCTGTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.54
1.3
68.8
42.3
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
75.4
0.57
1
71.9
37.7
Minor 5ss
40.3
-1.1
2.8
53.3
43.8
Minor BPS
60.5
0.41
2.2
87.39
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020262
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023763
155740407 - 155810920
70514