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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_155741314_155768343_F

Intron Information:

Intron Rank:
130849
Intron Class:
major
Intron Phase:
Intron Coordinates:
155741314 - 155768343
Intron Length:
27030

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATCTGA
5'SS Class:
major
3'SS Sequence:
TGTCTTCACTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TTTGTCTTCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
67.8
40.1
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
75.5
0.57
0.9
73.9
35.8
Minor 5ss
43.3
-0.7
2.9
56.8
47.3
Minor BPS
67.2
0.62
1.9
86.99
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020262
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019263
155738100 - 155769537
31438