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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_15579039_15579546_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15579039 - 15579546
Intron Length:
508

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATCTC
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTACTTTATTT
Flanking Amino Acid:
VETEEPLSARRLTENMRRLK
Intron Amino Acid Position:
218

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.9
78.6
35.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
93.1
0.97
0.7
92.4
26
Minor 5ss
38.1
-1.3
3.1
52.9
44.3
Minor BPS
67.5
0.63
1.6
84.37
36.8

Associated Gene:

Gene:
GRAMD4
Ensembl Gene ID:
ENSAPLG00000002925
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034407
15540718 - 15596834
56117
ENSAPLT00000020154
15521632 - 15596834
75203
ENSAPLT00000003013
15544875 - 15596834
51960
ENSAPLT00000046780
15521632 - 15596834
75203
ENSAPLT00000037161
15521632 - 15596834
75203