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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_15581701_15582997_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15581701 - 15582997
Intron Length:
1297

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTAAGTTAT
5'SS Class:
major
3'SS Sequence:
TCTTACTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TTTTTCTTACTC
Flanking Amino Acid:
SIYTSAIAFIIYMNAVWHGW
Intron Amino Acid Position:
258

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
78.8
30.7
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
83.3
0.75
0.8
77.4
31
Minor 5ss
44.4
-0.6
2.9
64.1
41.5
Minor BPS
72.3
0.68
1.5
81.43
33.4

Associated Gene:

Gene:
GRAMD4
Ensembl Gene ID:
ENSAPLG00000002925
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020154
15521632 - 15596834
75203
ENSAPLT00000003013
15544875 - 15596834
51960
ENSAPLT00000046780
15521632 - 15596834
75203
ENSAPLT00000037161
15521632 - 15596834
75203
ENSAPLT00000034407
15540718 - 15596834
56117