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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_15584484_15585273_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15584484 - 15585273
Intron Length:
790

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTGCCCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TGGAAATTAATC
Flanking Amino Acid:
SIVPEVSEPVEPPKEDLTVS
Intron Amino Acid Position:
305

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.5
35
Major BPS
83
0.82
0.8
82
24.9
Major PPT
68.8
0.42
1.1
67.8
38
Minor 5ss
40.3
-1.1
3.1
56.2
42.2
Minor BPS
48.4
-0.1
1.8
58.44
40

Associated Gene:

Gene:
GRAMD4
Ensembl Gene ID:
ENSAPLG00000002925
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037161
15521632 - 15596834
75203
ENSAPLT00000034407
15540718 - 15596834
56117
ENSAPLT00000020154
15521632 - 15596834
75203
ENSAPLT00000003013
15544875 - 15596834
51960
ENSAPLT00000046780
15521632 - 15596834
75203