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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_155861004_155944442_R

Intron Information:

Intron Rank:
153358
Intron Class:
major
Intron Phase:
Intron Coordinates:
155861004 - 155944442
Intron Length:
83439

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGAGC
5'SS Class:
major
3'SS Sequence:
CTTTTGTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTCTTTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
69.7
40.9
Major BPS
100
1.24
0.5
100
0
Major PPT
85.9
0.81
0.8
80.7
31.4
Minor 5ss
32.7
-2
3.1
43.6
43.7
Minor BPS
59.7
0.39
1.7
80.3
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029983
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037681
155860692 - 155945403
84712