About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_15586850_15586964_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15586850 - 15586964
Intron Length:
115

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TGTGTATTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
GTTTGTGTATTT
Flanking Amino Acid:
KMADILEKIKNLFMWVQPEI
Intron Amino Acid Position:
343

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.8
86.8
22.8
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
81.2
0.7
0.9
77.7
40.6
Minor 5ss
43.6
-0.7
2.9
58.5
40.4
Minor BPS
43.7
-0.4
2.4
67.71
44.1

Associated Gene:

Gene:
GRAMD4
Ensembl Gene ID:
ENSAPLG00000002925
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020154
15521632 - 15596834
75203
ENSAPLT00000003013
15544875 - 15596834
51960
ENSAPLT00000046780
15521632 - 15596834
75203
ENSAPLT00000037161
15521632 - 15596834
75203
ENSAPLT00000034407
15540718 - 15596834
56117