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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_15588477_15590768_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15588477 - 15590768
Intron Length:
2292

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGGATA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCCCTTGAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTTCTTTCAATC
Flanking Amino Acid:
ERSNATVSRRASLYYGYPKS
Intron Amino Acid Position:
435

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
1
78.7
37.2
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
65.7
0.35
1.7
77.8
31
Minor 5ss
35.4
-1.7
3.2
40.3
45.6
Minor BPS
60.7
0.32
1.5
71.41
33.8

Associated Gene:

Gene:
GRAMD4
Ensembl Gene ID:
ENSAPLG00000002925
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037161
15521632 - 15596834
75203
ENSAPLT00000034407
15540718 - 15596834
56117
ENSAPLT00000046780
15521632 - 15596834
75203