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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_15590805_15592197_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15590805 - 15592197
Intron Length:
1393

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAATACC
5'SS Class:
major
3'SS Sequence:
TATTTTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTTTTATTT
Flanking Amino Acid:
LYYGYPKSWMLQTAASRSYV
Intron Amino Acid Position:
452

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
73.9
34.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
92.6
0.96
0.7
88.6
28.1
Minor 5ss
36.5
-1.5
2.8
43.6
37.8
Minor BPS
64.7
0.54
1.5
79.8
36.8

Associated Gene:

Gene:
GRAMD4
Ensembl Gene ID:
ENSAPLG00000002925
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037161
15521632 - 15596834
75203