About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_15592904_15593993_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15592904 - 15593993
Intron Length:
1090

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
TCCTTGTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCAAAA
U12 Branch Point Sequence:
TGTATCAAAATG
Flanking Amino Acid:
IRNGILYVTENYLCFESSKS
Intron Amino Acid Position:
512

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.74
0.9
76.8
33.7
Major BPS
59.3
0.23
1
65.3
28.1
Major PPT
85.7
0.8
0.8
83.6
31.5
Minor 5ss
32.2
-2
3
41.4
39.1
Minor BPS
45.3
-0.5
1.9
53.3
41.8

Associated Gene:

Gene:
GRAMD4
Ensembl Gene ID:
ENSAPLG00000002925
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034407
15540718 - 15596834
56117
ENSAPLT00000020154
15521632 - 15596834
75203
ENSAPLT00000003013
15544875 - 15596834
51960
ENSAPLT00000046780
15521632 - 15596834
75203
ENSAPLT00000037161
15521632 - 15596834
75203