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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_156336645_156345980_R

Intron Information:

Intron Rank:
147154
Intron Class:
major
Intron Phase:
Intron Coordinates:
156336645 - 156345980
Intron Length:
9336

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCAGTGGA
5'SS Class:
major
3'SS Sequence:
CTCTTGCATACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TGTCTCTGAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1.3
72.4
39.5
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
74.8
0.56
0.9
68.6
36.4
Minor 5ss
27.5
-2.6
2.9
32.7
42
Minor BPS
58
0.11
1.5
62.39
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026480
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026390
156336405 - 156346081
9677