About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_156343801_156345980_R

Intron Information:

Intron Rank:
147153
Intron Class:
major
Intron Phase:
Intron Coordinates:
156343801 - 156345980
Intron Length:
2180

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCAGTGGA
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTTCTTCCTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1.3
72.4
39.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
94.8
1.01
0.5
92.6
17.3
Minor 5ss
27.5
-2.6
2.9
32.7
42
Minor BPS
45.9
-0.2
3.6
82.74
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026480
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039207
156343104 - 156346081
2978
ENSAPLT00000020814
156343104 - 156346045
2942