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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_156363327_156379776_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
156363327 - 156379776
Intron Length:
16450

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTACAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
ATTTTTACAACA
Flanking Amino Acid:
PSDEEFALRKSSRKESAPQV
Intron Amino Acid Position:
653

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
0.9
74.4
35.9
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
76
0.59
0.9
71.7
37.5
Minor 5ss
34.5
-1.8
3
40.9
39.3
Minor BPS
53.6
0.11
1.8
70.61
35.3

Associated Gene:

Gene:
ARHGEF7
Ensembl Gene ID:
ENSAPLG00000001023
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033395
156358902 - 156465474
106573