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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_156371703_156374943_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
156371703 - 156374943
Intron Length:
3241

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTAG
5'SS Class:
strong_major
3'SS Sequence:
TATACATCCTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTCATTTCACC
Flanking Amino Acid:
SAKTRQTLNSTWQGTDLMHN
Intron Amino Acid Position:
630

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
77.7
33.3
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
66.7
0.38
0.9
63.6
37.9
Minor 5ss
41.3
-1
2.8
49.5
41.1
Minor BPS
55.2
0.15
1.9
72.69
38.2

Associated Gene:

Gene:
ARHGEF7
Ensembl Gene ID:
ENSAPLG00000001023
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034806
156358902 - 156465474
106573
ENSAPLT00000029107
156358902 - 156465474
106573
ENSAPLT00000001182
156358902 - 156430678
71777