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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_156379871_156382060_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
156379871 - 156382060
Intron Length:
2190

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGATGC
5'SS Class:
strong_major
3'SS Sequence:
TCTCCCCTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TTTTTTCTATGT
Flanking Amino Acid:
RPSAALCYKEDLSKSPKTMK
Intron Amino Acid Position:
569

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.8
72
34.3
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
78.4
0.64
0.7
72.1
26.1
Minor 5ss
32.8
-2
3
41.8
45
Minor BPS
48.1
-0
2.1
75.57
41.7

Associated Gene:

Gene:
ARHGEF7
Ensembl Gene ID:
ENSAPLG00000001023
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033395
156358902 - 156465474
106573
ENSAPLT00000029107
156358902 - 156465474
106573
ENSAPLT00000018475
156358902 - 156465474
106573
ENSAPLT00000001182
156358902 - 156430678
71777
ENSAPLT00000034806
156358902 - 156465474
106573