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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_156384571_156387929_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
156384571 - 156387929
Intron Length:
3359

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGTAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTGGATTTAATT
Flanking Amino Acid:
SPRMSGFIYQGKLPMTGMTI
Intron Amino Acid Position:
421

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
74.3
31.9
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
95.5
1.02
0.5
95.9
14.1
Minor 5ss
35.4
-1.7
3.3
46.2
49.1
Minor BPS
61.4
0.44
1.6
76.19
41.2

Associated Gene:

Gene:
ARHGEF7
Ensembl Gene ID:
ENSAPLG00000001023
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033395
156358902 - 156465474
106573
ENSAPLT00000029107
156358902 - 156465474
106573
ENSAPLT00000018475
156358902 - 156465474
106573
ENSAPLT00000001182
156358902 - 156430678
71777
ENSAPLT00000034806
156358902 - 156465474
106573