About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_156388017_156389918_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
156388017 - 156389918
Intron Length:
1902

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGCAG
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTTTTAAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTAAAG
Flanking Amino Acid:
QVMIQCAGSEEKNERYLLLF
Intron Amino Acid Position:
392

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
69.6
42.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
81.3
0.7
1
82.7
32.1
Minor 5ss
30.1
-2.3
3.2
37.6
47.1
Minor BPS
72.6
0.57
1.4
75.95
35.7

Associated Gene:

Gene:
ARHGEF7
Ensembl Gene ID:
ENSAPLG00000001023
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033395
156358902 - 156465474
106573
ENSAPLT00000029107
156358902 - 156465474
106573
ENSAPLT00000018475
156358902 - 156465474
106573
ENSAPLT00000001182
156358902 - 156430678
71777
ENSAPLT00000034806
156358902 - 156465474
106573