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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_156391344_156392236_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
156391344 - 156392236
Intron Length:
893

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATATCTT
5'SS Class:
major
3'SS Sequence:
CCCTGGCTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
AAATCTTTTATT
Flanking Amino Acid:
LLKELERHMEDYHPDRPDIQ
Intron Amino Acid Position:
323

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
76.8
38.2
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
68.8
0.42
0.9
64.8
36.5
Minor 5ss
45.6
-0.5
3
67.2
43.9
Minor BPS
59.6
0.38
1.6
72.19
39

Associated Gene:

Gene:
ARHGEF7
Ensembl Gene ID:
ENSAPLG00000001023
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029107
156358902 - 156465474
106573
ENSAPLT00000018475
156358902 - 156465474
106573
ENSAPLT00000001182
156358902 - 156430678
71777
ENSAPLT00000034806
156358902 - 156465474
106573
ENSAPLT00000033395
156358902 - 156465474
106573