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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_156392376_156402287_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
156392376 - 156402287
Intron Length:
9912

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTTA
5'SS Class:
strong_major
3'SS Sequence:
CTTATGTGCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
ATTTGCTTAAAT
Flanking Amino Acid:
PSAVNVLTEHSEELGEFMEM
Intron Amino Acid Position:
276

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
85.8
25.5
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
69.7
0.44
1
63.9
41.6
Minor 5ss
49.9
-0
2.4
66.7
44.7
Minor BPS
70.3
0.71
1.8
87.9
37

Associated Gene:

Gene:
ARHGEF7
Ensembl Gene ID:
ENSAPLG00000001023
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033395
156358902 - 156465474
106573
ENSAPLT00000029107
156358902 - 156465474
106573
ENSAPLT00000018475
156358902 - 156465474
106573
ENSAPLT00000001182
156358902 - 156430678
71777
ENSAPLT00000034806
156358902 - 156465474
106573