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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_156410444_156410749_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
156410444 - 156410749
Intron Length:
306

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATGTGAG
5'SS Class:
major
3'SS Sequence:
ACCTTGGCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTTATTTACCT
Flanking Amino Acid:
NYLRPLQASEKLNSANTSYL
Intron Amino Acid Position:
203

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.63
1
67.8
37.5
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
68
0.41
1
57.7
42.7
Minor 5ss
39.8
-1.1
3.1
48.4
42.2
Minor BPS
68
0.64
1.8
88.66
36.3

Associated Gene:

Gene:
ARHGEF7
Ensembl Gene ID:
ENSAPLG00000001023
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029107
156358902 - 156465474
106573
ENSAPLT00000018475
156358902 - 156465474
106573
ENSAPLT00000001182
156358902 - 156430678
71777
ENSAPLT00000034806
156358902 - 156465474
106573
ENSAPLT00000033395
156358902 - 156465474
106573