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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_156428597_156430672_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
156428597 - 156430672
Intron Length:
2076

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTTA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
GTTTCTAGGACT
Flanking Amino Acid:
MKTFDANDLYQG
Intron Amino Acid Position:
3

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.8
80.2
30.7
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
93.5
0.98
0.6
92.1
18.4
Minor 5ss
42
-0.9
3
55.3
48.9
Minor BPS
54.6
0.23
1.8
77.89
38.1

Associated Gene:

Gene:
ARHGEF7
Ensembl Gene ID:
ENSAPLG00000001023
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001182
156358902 - 156430678
71777