About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_156428597_156465309_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
156428597 - 156465309
Intron Length:
36713

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGCGGC
5'SS Class:
major
3'SS Sequence:
CTTTTCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
GTTTCTAGGACT
Flanking Amino Acid:
ERLLPGSIDKTFDANDLYQG
Intron Amino Acid Position:
56

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
64.5
41.5
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
93.5
0.98
0.6
92.1
18.4
Minor 5ss
38.4
-1.3
3.4
50.1
40.9
Minor BPS
54.6
0.23
1.8
77.89
38.1

Associated Gene:

Gene:
ARHGEF7
Ensembl Gene ID:
ENSAPLG00000001023
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018475
156358902 - 156465474
106573
ENSAPLT00000034806
156358902 - 156465474
106573
ENSAPLT00000033395
156358902 - 156465474
106573
ENSAPLT00000029107
156358902 - 156465474
106573