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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_156496585_156498521_R

Intron Information:

Intron Rank:
144490
Intron Class:
major
Intron Phase:
Intron Coordinates:
156496585 - 156498521
Intron Length:
1937

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTTTC
5'SS Class:
major
3'SS Sequence:
TCTTTACATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATCTTTACAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
76.8
32.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
76.5
0.6
0.9
75.2
33.8
Minor 5ss
53.3
0.11
2.3
70.3
40.3
Minor BPS
64.7
0.54
1.7
81.97
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025027
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038054
156490791 - 156498884
8094