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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_156508713_156516031_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
156508713 - 156516031
Intron Length:
7319

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTATGCTTGACA
Flanking Amino Acid:
IQVGANINKQDYVGETPIHK
Intron Amino Acid Position:
119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
81.2
33.3
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
89.5
0.89
0.7
84
31
Minor 5ss
48.8
-0.1
3.1
72.7
44.5
Minor BPS
69
0.59
1.8
79.29
36.9

Associated Gene:

Gene:
ANKRD10
Ensembl Gene ID:
ENSAPLG00000003600
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043455
156502667 - 156538263
35597
ENSAPLT00000003716
156502667 - 156539116
36450