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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_156537868_156538226_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
156537868 - 156538226
Intron Length:
359

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGACAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TATTTCTCAGCT
Flanking Amino Acid:
EHSNSVKVEQRAVSPFIKTT
Intron Amino Acid Position:
399

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
69.6
36.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
86.3
0.82
0.6
85.1
22.3
Minor 5ss
37.4
-1.4
3
47.2
48.2
Minor BPS
61.7
0.45
1.8
81.44
39.9

Associated Gene:

Gene:
ANKRD10
Ensembl Gene ID:
ENSAPLG00000003600
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043455
156502667 - 156538263
35597