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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_156573616_156576273_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
156573616 - 156576273
Intron Length:
2658

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TCGATCTGAAAT
Flanking Amino Acid:
LMREIDAKYQEILKDLDDYY
Intron Amino Acid Position:
154

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.5
1.1
0.7
87.9
25.6
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
89.5
0.89
0.6
84.7
23
Minor 5ss
35.3
-1.7
3.2
50.4
46
Minor BPS
51.3
0.12
1.6
66.48
43.9

Associated Gene:

Gene:
ING1
Ensembl Gene ID:
ENSAPLG00000020749
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043933
156572853 - 156592902
20050