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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_156583576_156583661_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
156583576 - 156583661
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGCGGCG
5'SS Class:
weak_major
3'SS Sequence:
TGTGTCTCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTGAC
U12 Branch Point Sequence:
GTTTGCCTCCCT
Flanking Amino Acid:
LVLARERVATWYSCGPTVYD
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
56.4
0.15
1.3
47.3
40.3
Major BPS
49.4
-0
1.3
42.8
41.8
Major PPT
75.6
0.58
0.9
69.7
36.7
Minor 5ss
33.8
-1.8
3.8
43.8
46
Minor BPS
34.5
-1.1
3.8
69.09
47.4

Associated Gene:

Gene:
CARS2
Ensembl Gene ID:
ENSAPLG00000006716
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006973
156583361 - 156617319
33959