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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_156583713_156587360_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
156583713 - 156587360
Intron Length:
3648

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
TGTTTAAAAACT
Flanking Amino Acid:
VYDRAHLGHACSYVRFDIIR
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
70.2
35.9
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
88.3
0.86
0.7
80.7
31.3
Minor 5ss
26.7
-2.7
3
27.9
37.8
Minor BPS
47.9
-0
2.1
74.65
41.7

Associated Gene:

Gene:
CARS2
Ensembl Gene ID:
ENSAPLG00000006716
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006973
156583361 - 156617319
33959