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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_156587479_156589871_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
156587479 - 156589871
Intron Length:
2393

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTTACTGATCT
Flanking Amino Acid:
DDKIIKRANEMNISPVALAR
Intron Amino Acid Position:
129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.94
0.9
90.9
28.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
98.2
1.08
0.5
92.3
26.6
Minor 5ss
40.3
-1.1
3.2
59.2
45.4
Minor BPS
57.4
0.31
1.9
80.84
40.3

Associated Gene:

Gene:
CARS2
Ensembl Gene ID:
ENSAPLG00000006716
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006973
156583361 - 156617319
33959