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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_15658808_15667965_R

Intron Information:

Intron Rank:
138139
Intron Class:
major
Intron Phase:
Intron Coordinates:
15658808 - 15667965
Intron Length:
9158

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGCTTC
5'SS Class:
major
3'SS Sequence:
AATTCTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
TCAACACTAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
0.9
71
35.7
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
83.4
0.75
0.8
77.5
35.7
Minor 5ss
43.1
-0.8
3
55.7
43.3
Minor BPS
47.1
-0.2
1.9
58.19
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021838
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017567
15658643 - 15669065
10423