Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_156604391_156607965_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

156604391 - 156607965

Intron Length:

3575

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGGAAA

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTTCCTTAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATAACAC

U12 Branch Point Sequence:

TCCTCCATAACA

Flanking Amino Acid:

MFCLRSRYSSAVEFSDETMN

Intron Amino Acid Position:

349

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.6

0.98

0.8

28.8

Major BPS

52.3

0.06

1.1

61.1

34.5

Major PPT

88.3

0.86

0.6

89.2

19.7

Minor 5ss

31.6

-2.1

3.1

46.4

Minor BPS

69.5

0.61

1.6

76.13

41.2

Associated Gene:

Gene:

CARS2

Ensembl Gene ID:

ENSAPLG00000006716

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006973

156583361 - 156617319

33959