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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_156608105_156610138_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
156608105 - 156610138
Intron Length:
2034

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCTTGAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAA
U12 Branch Point Sequence:
TTATCTTAAACG
Flanking Amino Acid:
DPVREDILWERLASTKVNVK
Intron Amino Acid Position:
395

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96
1.08
0.7
85.2
32.2
Major BPS
77.8
0.69
1
78.2
31.8
Major PPT
81.2
0.7
0.9
83.2
25.6
Minor 5ss
36.3
-1.6
3.3
48.7
47.5
Minor BPS
66.7
0.38
1.7
71.91
41.2

Associated Gene:

Gene:
CARS2
Ensembl Gene ID:
ENSAPLG00000006716
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006973
156583361 - 156617319
33959