About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_156612040_156614385_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
156612040 - 156614385
Intron Length:
2346

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAAAC
5'SS Class:
strong_major
3'SS Sequence:
GTTTGATTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATGTTTTTAAAA
Flanking Amino Acid:
ALGMSFEERQVAAGGGNSAL
Intron Amino Acid Position:
470

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
76.8
31.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
80.4
0.68
0.9
73
41.3
Minor 5ss
39.9
-1.1
2.8
51.4
45.5
Minor BPS
65.7
0.49
1.3
70.27
36

Associated Gene:

Gene:
CARS2
Ensembl Gene ID:
ENSAPLG00000006716
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006973
156583361 - 156617319
33959