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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_156632250_156632329_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
156632250 - 156632329
Intron Length:
80

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
CTGTTTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TACTTCTTACTG
Flanking Amino Acid:
LKGIPIIIDADGLWLISQQP
Intron Amino Acid Position:
461

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.65
1.1
80.4
34
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
88.3
0.86
0.7
84
31
Minor 5ss
42.2
-0.9
2.9
61.3
43
Minor BPS
56.6
0.07
1.7
59.43
43.1

Associated Gene:

Gene:
NAXD
Ensembl Gene ID:
ENSAPLG00000011789
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012313
156620193 - 156665825
45633