About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_156632250_156644829_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
156632250 - 156644829
Intron Length:
12580

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATATGT
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TACTTCTTACTG
Flanking Amino Acid:
RDEVLLENAKDGLWLISQQP
Intron Amino Acid Position:
444

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
74.4
36.8
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
88.3
0.86
0.7
84
31
Minor 5ss
39.7
-1.2
3.1
57.2
46.8
Minor BPS
56.6
0.07
1.7
59.43
43.1

Associated Gene:

Gene:
NAXD
Ensembl Gene ID:
ENSAPLG00000011789
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040352
156620193 - 156665825
45633