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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_156632381_156644829_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
156632381 - 156644829
Intron Length:
12449

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATATGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
GCTTCTTAAAGT
Flanking Amino Acid:
RDEVLLENAKGIIEKSKLKG
Intron Amino Acid Position:
444

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
74.4
36.8
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
96.3
1.04
0.5
92.6
17.2
Minor 5ss
39.7
-1.2
3.1
57.2
46.8
Minor BPS
53.9
0.2
2
71.8
45.5

Associated Gene:

Gene:
NAXD
Ensembl Gene ID:
ENSAPLG00000011789
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012313
156620193 - 156665825
45633