Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_156644939_156656878_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

156644939 - 156656878

Intron Length:

11940

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCT|GTAAGTGAC

5'SS Class:

major

3'SS Sequence:

TAATTTTGTTTAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTGAA

U12 Branch Point Sequence:

CCCCCCCTAATT

Flanking Amino Acid:

YSPELIVHPVLDSPNAVYEV

Intron Amino Acid Position:

407

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.6

0.58

1.1

69.1

35.8

Major BPS

87.2

0.92

0.8

77.7

37.1

Major PPT

74.5

0.55

41.1

Minor 5ss

35.9

-1.6

3.3

53.4

43.8

Minor BPS

52.6

0.16

1.8

65.6

45.3

Associated Gene:

Gene:

NAXD

Ensembl Gene ID:

ENSAPLG00000011789

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040352

156620193 - 156665825

45633

ENSAPLT00000012313

156620193 - 156665825

45633